Galaxy – Install tools from Workflow using Ephemeris

In order to run a workflow, you need proper tools and versions. With the help of Ephemeris one can achieve it easily. To install ephemeris: pip3 install ephemeris --user Then, get a YAML out of a give workflow: workflow-to-tools -w galaxy_workflow.ga -o galaxy_workflow.ga.yaml Get one API key for you @ admin session in Galaxy and: … Continue reading Galaxy – Install tools from Workflow using Ephemeris

JupyterHub – Install

JupyterHub brings the power of notebooks to groups of users. This is a quick note on installing JupyterHub using Debian 10. # get venv sudo apt-get install python3-venv # start venv sudo python3 -m venv /opt/jupyterhub/ # install packages sudo /opt/jupyterhub/bin/python3 -m pip install wheel sudo /opt/jupyterhub/bin/python3 -m pip install jupyterhub jupyterlab sudo /opt/jupyterhub/bin/python3 -m … Continue reading JupyterHub – Install