Galaxy – Install tools from Workflow using Ephemeris

In order to run a workflow, you need proper tools and versions. With the help of Ephemeris one can achieve it easily.

To install ephemeris:

pip3 install ephemeris --user

Then, get a YAML out of a give workflow:

workflow-to-tools -w galaxy_workflow.ga -o galaxy_workflow.ga.yaml

Get one API key for you @ admin session in Galaxy and:

shed-tools install -t galaxy_workflow.ga.yaml -a your_API_KEY

References

https://ephemeris.readthedocs.io/en/latest/

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