Quick note on how to download data from Basespace.
For Linux users, you cannot bulk download files using web interface. The alternative is to use BaseSpace Sequence Hub CLI.
First, fetch “bs” application by using:
wget "https://api.bintray.com/content/basespace/BaseSpaceCLI-EarlyAccess-BIN/latest/\$latest/amd64-linux/bs?bt_package=latest" -O bs
chmod +X ./bs chmod 755 ./bs
Then, authenticate at Basespace:
This command will throw a web link for you enter your credentials.
After that, list available projects:
./bs list project
And, Download it 🙂
./bs download project --name FOOBAR -o FOOBAR